Chapter 2

Which DNA Patterns Play the Role of Molecular Clocks?

 

Do we Have a "Clock" Gene?

Lesson 2.1

 

Lesson 2.2

Motif Finding is More Difficult Than You Think

 

Scoring Motifs

Lesson 2.3

 

From Motif Finding to Finding a Median String

Lesson 2.4

 

Greedy Motif Search

Lesson 2.5

Motif Finding Meets Oliver Cromwell

Lesson 2.6

 
 

Randomized Motif Search

Lesson 2.7

 

How Can a Randomized Algorithm Perform So Well?

Lesson 2.8

 

Gibbs Sampling

Lesson 2.9

 

Gibbs Sampling in Action

Lesson 2.10

 

How Does Tuberculosis Hibernate?

Ch. 2 Epilogue

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© 2020 by Phillip Compeau & Pavel Pevzner    |    All Rights Reserved    |    ISBN: 978-0-9903746